Package: RNentropy 1.3.3

RNentropy: Entropy Based Method for the Detection of Significant Variation in Gene Expression Data

An implementation of a method based on information theory devised for the identification of genes showing a significant variation of expression across multiple conditions. Given expression estimates from any number of RNA-Seq samples and conditions it identifies genes or transcripts with a significant variation of expression across all the conditions studied, together with the samples in which they are over- or under-expressed. It also detects genes whose relative isoform usage changes across samples (isoform switching). Zambelli et al. (2018) <doi:10.1093/nar/gky055>.

Authors:Federico Zambelli [aut, cre], Giulio Pavesi [aut]

RNentropy_1.3.3.tar.gz
RNentropy_1.3.3.zip(r-4.7-any)RNentropy_1.3.3.zip(r-4.6-any)RNentropy_1.3.3.zip(r-4.5-any)
RNentropy_1.3.3.tgz(r-4.6-any)RNentropy_1.3.3.tgz(r-4.5-any)
RNentropy_1.3.3.tar.gz(r-4.7-any)RNentropy_1.3.3.tar.gz(r-4.6-any)
RNentropy_1.3.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RNentropy/json (API)

# Install 'RNentropy' in R:
install.packages('RNentropy', repos = c('https://federico77z.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/federico77z/rnentropy/issues

Datasets:

On CRAN:

Conda:

3.60 score 1 stars 475 downloads 2 mentions 9 exports 0 dependencies

Last updated from:4aa1182324. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK109
source / vignettesOK281
linux-releaseOK95
macos-releaseOK133
macos-oldrelOK151
windows-develOK75
windows-releaseOK70
windows-oldrelOK71
wasm-releaseOK69

Exports:RN_calcRN_calc_GPVRN_calc_LPVRN_iso_calcRN_iso_selectRN_pmiRN_selectRNentropyRNentropy_iso_switch

Dependencies: