# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "RNentropy" in publications use:'
type: software
license: GPL-3.0-only
title: 'RNentropy: Entropy Based Method for the Detection of Significant Variation
  in Gene Expression Data'
version: 1.3.3
doi: 10.1093/nar/gky055
identifiers:
- type: doi
  value: 10.32614/CRAN.package.RNentropy
abstract: An implementation of a method based on information theory devised for the
  identification of genes showing a significant variation of expression across multiple
  conditions. Given expression estimates from any number of RNA-Seq samples and conditions
  it identifies genes or transcripts with a significant variation of expression across
  all the conditions studied, together with the samples in which they are over- or
  under-expressed. It also detects genes whose relative isoform usage changes across
  samples (isoform switching). Zambelli et al. (2018) <https://doi.org/10.1093/nar/gky055>.
authors:
- family-names: Zambelli
  given-names: Federico
  email: federico.zambelli@unimi.it
  orcid: https://orcid.org/0000-0003-3487-4331
- family-names: Pavesi
  given-names: Giulio
  email: giulio.pavesi@unimi.it
  orcid: https://orcid.org/0000-0001-5705-6249
preferred-citation:
  type: article
  title: 'RNentropy: an entropy-based tool for the detection of significant variation
    of gene expression across multiple RNA-Seq experiments'
  authors:
  - family-names: Zambelli
    given-names: Federico
    email: federico.zambelli@unimi.it
    orcid: https://orcid.org/0000-0003-3487-4331
  - family-names: Mastropasqua
    given-names: Francesca
  - family-names: Picardi
    given-names: Ernesto
  - family-names: D'Erchia
    given-names: Anna Maria
  - family-names: Pesole
    given-names: Graziano
  - family-names: Pavesi
    given-names: Giulio
    email: giulio.pavesi@unimi.it
    orcid: https://orcid.org/0000-0001-5705-6249
  journal: Nucleic Acids Research
  year: '2018'
  volume: '46'
  issue: '8'
  doi: 10.1093/nar/gky055
  start: e46
repository: https://federico77z.r-universe.dev
commit: 4aa118232426b3a8c46e3c6e7f9672d0d9b5d52a
date-released: '2026-09-28'
contact:
- family-names: Zambelli
  given-names: Federico
  email: federico.zambelli@unimi.it
  orcid: https://orcid.org/0000-0003-3487-4331
references:
- type: generic
  title: Using RNentropy to Detect Significant Variation in Gene Expression Across
    Multiple RNA-Seq or Single-Cell RNA-Seq Samples
  authors:
  - family-names: Zambelli
    given-names: Federico
  - family-names: Pavesi
    given-names: Giulio
  collection-title: RNA Bioinformatics
  collection-type: collection
  volume: '2284'
  publisher:
    name: Springer US
  year: '2021'
  doi: 10.1007/978-1-0716-1307-8_6
  start: '77'
  end: '96'